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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16566321_16566932_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16566321 - 16566932
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAA
U12 Branch Point Sequence:
AAGTCTTCCATT
Flanking Amino Acid:
DRCHHCSVCAICVLKMDHHC
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
53.5
0.09
1
51
33.8
Major PPT
85.7
0.8
0.8
80.4
31.6
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
47.1
-0.1
1.9
63.38
41.5

Associated Gene:

Gene:
ZDHHC15
Ensembl Gene ID:
ENSAPLG00000008698
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009061
16554388 - 16574788
20401