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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16567003_16567826_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16567003 - 16567826
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGCTAA
5'SS Class:
major
3'SS Sequence:
TCTTTAATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTGTCTTTAATT
Flanking Amino Acid:
LPVYTRTGNGGIRFCDRCQL
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
71.1
37.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.7
0.76
0.8
77.6
34.4
Minor 5ss
38.6
-1.3
2.9
47.2
48.2
Minor BPS
78
0.96
1.1
84.33
36.9

Associated Gene:

Gene:
ZDHHC15
Ensembl Gene ID:
ENSAPLG00000008698
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009061
16554388 - 16574788
20401