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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16567948_16569415_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16567948 - 16569415
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCATGACT
Flanking Amino Acid:
FTLPVQPGKKYHMSYADKER
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.5
0.66
0.8
77.2
31.6
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
59
0.37
1.6
77.32
39.1

Associated Gene:

Gene:
ZDHHC15
Ensembl Gene ID:
ENSAPLG00000008698
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009061
16554388 - 16574788
20401