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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16569511_16571867_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16569511 - 16571867
Intron Length:
2357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TGTTTTTTTTTT
Flanking Amino Acid:
LVTLSNPVEKVAYLIIFHIL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
41.4
-0.5
3.5
71.36
40.7

Associated Gene:

Gene:
ZDHHC15
Ensembl Gene ID:
ENSAPLG00000008698
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009061
16554388 - 16574788
20401