About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1662011_1664491_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1662011 - 1664491
Intron Length:
2481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCGTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTTGCTTTACT
Flanking Amino Acid:
FRLQRRDQITGLQKRSAENC
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.5
0.48
0.9
65
36.3
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
63.7
0.51
2.1
84
43

Associated Gene:

Gene:
ITM2A
Ensembl Gene ID:
ENSAPLG00000011114
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011588
1661724 - 1670098
8375