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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16626495_16636868_R

Intron Information:

Intron Rank:
139244
Intron Class:
major
Intron Phase:
Intron Coordinates:
16626495 - 16636868
Intron Length:
10374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.9
0.58
0.9
68.6
36
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
65.4
0.56
1.9
88.15
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022371
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047090
16626180 - 16637843
11664