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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1664643_1665779_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1664643 - 1665779
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTGGA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TGTATCTCAAGG
Flanking Amino Acid:
NLMDLFAKLATGSYLPQTYL
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.4
40.6
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
38.6
-1.3
3.1
48.9
47.3
Minor BPS
48.3
-0.2
1.9
56.87
44.3

Associated Gene:

Gene:
ITM2A
Ensembl Gene ID:
ENSAPLG00000011114
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011588
1661724 - 1670098
8375