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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1665891_1666390_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1665891 - 1666390
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCGAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TCCCTCCGAAAT
Flanking Amino Acid:
PAAIVHDFDRLLTAYLDLQL
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
55
0.11
0.9
50.4
31.7
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
44.5
-0.3
1.8
59.99
43

Associated Gene:

Gene:
ITM2A
Ensembl Gene ID:
ENSAPLG00000011114
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011588
1661724 - 1670098
8375