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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16661557_16663052_R

Intron Information:

Intron Rank:
139858
Intron Class:
major
Intron Phase:
Intron Coordinates:
16661557 - 16663052
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTAATTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCCAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
71.2
40.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.2
0.39
1
59
46.3
Minor 5ss
31.7
-2.1
3
40.4
45.7
Minor BPS
56.3
0.28
1.8
75.83
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022619
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028056
16659658 - 16663229
3572