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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1666580_1666802_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1666580 - 1666802
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGTGA
5'SS Class:
major
3'SS Sequence:
CTCTTACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTGCTCTTACTT
Flanking Amino Acid:
ACIYKYFMPKHKVYRGEMCY
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
59.4
42
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
83.9
0.76
0.8
81.1
29.7
Minor 5ss
34.8
-1.7
3.5
47.2
48.2
Minor BPS
61.1
0.43
1.6
76.51
40.7

Associated Gene:

Gene:
ITM2A
Ensembl Gene ID:
ENSAPLG00000011114
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011588
1661724 - 1670098
8375