About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_167046_167599_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
167046 - 167599
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTGTCCTCATGT
Flanking Amino Acid:
MTVLQTIFITLNLAG
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.3
34.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
90.9
0.92
0.6
84.7
30.2
Minor 5ss
32.3
-2
3.4
39.2
41
Minor BPS
47.9
-0
2.1
67.69
48.8

Associated Gene:

Gene:
MSN
Ensembl Gene ID:
ENSAPLG00000004209
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034776
164545 - 173502
8958