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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16731587_16767586_R

Intron Information:

Intron Rank:
147431
Intron Class:
major
Intron Phase:
Intron Coordinates:
16731587 - 16767586
Intron Length:
36000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGAT
5'SS Class:
major
3'SS Sequence:
TTTGAAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTGCCTTTGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.1
37.5
Major BPS
74.8
0.62
1
67
39.8
Major PPT
76
0.58
1
71.5
42.8
Minor 5ss
25
-2.9
3.4
28.9
43.6
Minor BPS
60.5
0.32
1.4
68.77
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026649
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037474
16725343 - 16767659
42317