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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_167505_167599_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
167505 - 167599
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAATCCCA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTGTCCTCATGT
Flanking Amino Acid:
QLGWTAARSKSIFITLNLAG
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1.2
48.3
42.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
90.9
0.92
0.6
84.7
30.2
Minor 5ss
40.2
-1.1
3
49.9
45.9
Minor BPS
47.9
-0
2.1
67.69
48.8

Associated Gene:

Gene:
MSN
Ensembl Gene ID:
ENSAPLG00000004209
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005100
167192 - 173502
6311