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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16775905_16779607_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16775905 - 16779607
Intron Length:
3703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGCCCCAACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTTCTCACAT
Flanking Amino Acid:
MNERGELYGSKKLTRECVFR
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.2
34.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
61.5
0.26
0.9
55
34
Minor 5ss
41.9
-0.9
2.7
55
42.2
Minor BPS
49.9
0.07
1.9
72.8
44.1

Associated Gene:

Gene:
FGF16
Ensembl Gene ID:
ENSAPLG00000006381
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006604
16769523 - 16780856
11334