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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16788604_16789440_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16788604 - 16789440
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAATAT
5'SS Class:
major
3'SS Sequence:
TTTCCCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCCCTTCACA
Flanking Amino Acid:
YNDVLTKQQMLIGCVQRILM
Intron Amino Acid Position:
2264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72.8
32.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
84.8
0.78
0.7
79.7
25.7
Minor 5ss
39.1
-1.2
3.3
52.6
45.6
Minor BPS
74.1
0.75
1.7
85.03
34.5

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925