About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16791260_16792437_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16791260 - 16792437
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAC
U12 Branch Point Sequence:
TTGTTCAGACAA
Flanking Amino Acid:
AWAEYEAEKKGLTMRFNMPT
Intron Amino Acid Position:
2147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
64.2
0.35
1
60.7
37.6
Major PPT
73.3
0.52
1.1
71.5
43.2
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
43.4
-0.5
2
58.05
41.2

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925