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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16799831_16801326_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16799831 - 16801326
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
GTTTGTATAAAA
Flanking Amino Acid:
PVFVYRFLAQGTMEDKIYDR
Intron Amino Acid Position:
2032

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
77
0.61
0.9
69.2
41.8
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
48.4
-0.1
2.1
66.33
39.8

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925