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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16801505_16802528_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16801505 - 16802528
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TAGTAAAAAATT
Flanking Amino Acid:
AEEFNDETNVRGRLFIISTK
Intron Amino Acid Position:
1972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
84.1
0.77
0.8
76.4
37.7
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
41.2
-0.5
2.1
60.41
42.9

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925