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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16802638_16804673_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16802638 - 16804673
Intron Length:
2036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTAACATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGACTCTTAACA
Flanking Amino Acid:
TDKDKAPIYKGEGKWFRNID
Intron Amino Acid Position:
1936

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.7
0.53
0.9
70.8
39.7
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
72.3
0.7
1.2
74.59
36.1

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925