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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16804778_16805062_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16804778 - 16805062
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTAAT
U12 Branch Point Sequence:
CAAAGGTTAATG
Flanking Amino Acid:
LRMAEELGDKVLVFSQSLIS
Intron Amino Acid Position:
1901

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
61.8
44.4
Major BPS
66.6
0.41
1.4
69.7
44.2
Major PPT
90
0.9
0.7
88.2
29.1
Minor 5ss
35.6
-1.6
3
42.1
44.4
Minor BPS
40.7
-0.8
2.3
41.68
43.2

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925