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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16805217_16807440_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16805217 - 16807440
Intron Length:
2224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TATCTCTGAATT
Flanking Amino Acid:
NPPSVTKSDEGKPTSSSNPG
Intron Amino Acid Position:
1850

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
81.2
0.7
0.8
76.5
37.7
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
65.7
0.57
1.4
79.51
36

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925