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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16807614_16807814_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16807614 - 16807814
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTGAG
5'SS Class:
major
3'SS Sequence:
GTTATCTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTTATCTTCATA
Flanking Amino Acid:
SMSLSSDDYAKKKKSKGKKM
Intron Amino Acid Position:
1792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
67.9
37.3
Major BPS
80
0.75
1
78.6
31
Major PPT
74.5
0.55
0.9
69
37
Minor 5ss
33.8
-1.8
3.2
40.5
39.9
Minor BPS
55.7
0.17
1.8
68.23
38.5

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925