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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16807904_16808199_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16807904 - 16808199
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GCATAATTAATA
Flanking Amino Acid:
QLDYISKENKGYFDEDSLDD
Intron Amino Acid Position:
1763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.3
33.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.5
0.48
1.7
84.7
30.2
Minor 5ss
38.9
-1.2
2.9
48.7
47.5
Minor BPS
50.2
0
1.8
59.44
40

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925