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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16808331_16811768_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16808331 - 16811768
Intron Length:
3438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTATTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATACCTGAACT
Flanking Amino Acid:
LYQYYLDHLTGVGSGNEGGR
Intron Amino Acid Position:
1719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.5
35.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.7
0.56
1
73.9
40.1
Minor 5ss
32.9
-2
3.3
44.7
43.3
Minor BPS
67.4
0.63
1.5
79.34
42

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925