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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16814103_16815049_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16814103 - 16815049
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAACAACT
Flanking Amino Acid:
GTPLQNNLIEYHCMVNFIKE
Intron Amino Acid Position:
1621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.3
36.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.6
0.85
0.8
80.3
37.3
Minor 5ss
33.1
-1.9
2.8
41.4
38.2
Minor BPS
58.5
0.34
2.1
87.17
37.6

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925