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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16834726_16835112_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16834726 - 16835112
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATTCCTATGATG
Flanking Amino Acid:
REREREKLREVIEIEDASPL
Intron Amino Acid Position:
1383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82.1
0.72
0.8
76.8
32
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
49.6
-0.1
1.6
59.04
36.7

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925