About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16837865_16838404_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
16837865 - 16838404
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TCTCCGACAGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TGACTCTTATCT
Flanking Amino Acid:
GKQNENTADDENEKEEDNSE
Intron Amino Acid Position:
1250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.6
37.6
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
53.7
0.08
1.1
54.3
34.1
Minor 5ss
35.3
-1.7
2.8
41.4
39.1
Minor BPS
60.5
0.41
1.6
75.06
41.2

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925