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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16838536_16844956_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16838536 - 16844956
Intron Length:
6421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTTACTTCAAAG
Flanking Amino Acid:
EDDDDDDPENRIAKKMLLEE
Intron Amino Acid Position:
1206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.7
31.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
73.9
0.54
1
74.9
33.5
Minor 5ss
48.6
-0.1
2.8
67.6
43.7
Minor BPS
56.2
0.06
1.8
65.94
41.5

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925