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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16851245_16852727_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16851245 - 16852727
Intron Length:
1483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ACTTTCATATTT
Flanking Amino Acid:
RDSDGMDEQCRWCAEGGNLI
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
87.1
30
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83
0.74
0.9
80.5
37
Minor 5ss
37.9
-1.4
3.1
50.4
46.1
Minor BPS
50.3
0.09
1.8
70.5
41

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925