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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16852796_16854868_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16852796 - 16854868
Intron Length:
2073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCGTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
ATTGAATGAAAA
Flanking Amino Acid:
HPTLKVLICKTCYKYYMSDD
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
81.4
0.71
0.8
77
31.6
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
44.2
-0.4
2
58.77
39.9

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925