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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16854979_16858479_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16854979 - 16858479
Intron Length:
3501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
ATCCTCTCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGGTTTATAATC
Flanking Amino Acid:
MKPEAPKKRGEEGLHGIVSC
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
75.2
0.57
0.8
69.4
30.7
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
54.3
0.11
1.6
63.12
36.8

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925