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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1685564_1687826_R

Intron Information:

Intron Rank:
142740
Intron Class:
major
Intron Phase:
Intron Coordinates:
1685564 - 1687826
Intron Length:
2263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.8
0.71
0.8
72.9
37
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
47.5
-0.1
2.1
72.53
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024077
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040885
1685315 - 1689628
4314