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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16858600_16859868_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16858600 - 16859868
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTCAT
5'SS Class:
major
3'SS Sequence:
GGAATTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AATTTCTAAATG
Flanking Amino Acid:
NDVDMKSLPKGTVVVQPEPV
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
70.7
41.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
62
0.27
1
51.9
46.6
Minor 5ss
34.6
-1.8
3.3
49.6
46.6
Minor BPS
58.4
0.13
1.7
62.27
40.1

Associated Gene:

Gene:
ATRX
Ensembl Gene ID:
ENSAPLG00000006382
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006696
16788325 - 16867249
78925