About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16886527_16887115_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16886527 - 16887115
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAG
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
FRSKYHGYPYRNLYISGASF
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.9
44.1
Major BPS
46.7
-0.2
1.7
60.8
45.4
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
35
-1.7
3.8
55.9
48.3
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
MAGT1
Ensembl Gene ID:
ENSAPLG00000007136
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040347
16886298 - 16897354
11057