Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16887207_16888619_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16887207 - 16888619

Intron Length:

1413

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTACA

5'SS Class:

strong_major

3'SS Sequence:

GTGTCTCTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTTAC

U12 Branch Point Sequence:

ACTGCCATAATC

Flanking Amino Acid:

TSDLDVGKRKIMCIAGIGLV

Intron Amino Acid Position:

311

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

79.5

28.2

Major BPS

72.7

0.56

0.9

63.4

35.2

Major PPT

79.7

0.67

0.9

73.4

Minor 5ss

32.3

-2

2.6

35.1

34.3

Minor BPS

56.7

0.19

1.7

65.38

40.6

Associated Gene:

Gene:

MAGT1

Ensembl Gene ID:

ENSAPLG00000007136

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040347

16886298 - 16897354

11057

ENSAPLT00000007427

16885242 - 16897354

12113