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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16895410_16896257_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16895410 - 16896257
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGGCT
5'SS Class:
major
3'SS Sequence:
TGTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TGTGTTTTTACA
Flanking Amino Acid:
LQPHRQCVVCKQADEEYQIL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
65.9
37.9
Major BPS
61.1
0.28
1
67
29.8
Major PPT
85.7
0.8
0.8
79.9
37.7
Minor 5ss
39.7
-1.2
3.6
56.1
42.7
Minor BPS
54.4
0.13
1.7
66.95
39.5

Associated Gene:

Gene:
MAGT1
Ensembl Gene ID:
ENSAPLG00000007136
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040347
16886298 - 16897354
11057
ENSAPLT00000007427
16885242 - 16897354
12113