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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16900545_16901159_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16900545 - 16901159
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TATCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTGGGTTTATCC
Flanking Amino Acid:
AAVFATVWGYVFTQAGIEWG
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.8
0.58
0.8
70
30.4
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
47.5
-0.2
2.1
61.2
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007286
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007552
16899160 - 16901234
2075
Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897