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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16901600_16908412_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
16901600 - 16908412
Intron Length:
6813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTGGCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AAAGCTCTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
68.8
38
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
72.4
0.5
1
66.7
39.5
Minor 5ss
32.4
-2
2.7
41.3
38.3
Minor BPS
49.6
0.05
1.7
65.04
39.6

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897