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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16913555_16914733_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16913555 - 16914733
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGACG
5'SS Class:
major
3'SS Sequence:
ATCTCTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTGTCATGAATT
Flanking Amino Acid:
EDMGFDASLSAKTELPVGVT
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.9
41.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.7
0.76
0.7
81.3
30
Minor 5ss
32.7
-2
3.1
41
45
Minor BPS
58.2
0.34
1.7
75.17
41.3

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897