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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16916132_16919638_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16916132 - 16919638
Intron Length:
3507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGCTAG
5'SS Class:
major
3'SS Sequence:
CTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCGATAACG
Flanking Amino Acid:
GEGDGILDLVVGGMASASCV
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60.6
40.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
45.8
-0.4
2.9
61.4
44.4
Minor BPS
53.2
-0
2.4
69.34
43.6

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897