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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16920504_16920699_F

Intron Information:

Intron Rank:
9
Intron Class:
major_hybrid
Intron Phase:
2
Intron Coordinates:
16920504 - 16920699
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAACCTGAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
SHLDHKREIRQWRRAFFVSL
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
48.6
-0
1.7
56.5
43.1
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897