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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16920926_16921351_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16920926 - 16921351
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
TAATGTATAACT
Flanking Amino Acid:
LSFILCVPVQIFGGWHFYIQ
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39.5
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
75.8
0.58
1
68.3
42.2
Minor 5ss
35.7
-1.6
3.3
45.9
49.3
Minor BPS
53.2
0.18
2
75.04
41.4

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897