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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16921586_16922050_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16921586 - 16922050
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATTTCTTATTC
Flanking Amino Acid:
LGRWLEHVAKGKTSEALARL
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.8
0.78
0.7
78.3
34.8
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
63.1
0.39
1.5
69.46
36.1

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897