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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16922143_16922524_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16922143 - 16922524
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTAC
5'SS Class:
weak_major
3'SS Sequence:
TTTAAAACTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCTTGTTTAAAA
Flanking Amino Acid:
VTLGPDNVLLSEEQVDVELV
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
71
35.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
67.1
0.39
1
57.2
43
Minor 5ss
57.5
0.25
2
69.7
41.2
Minor BPS
60.6
0.33
1.9
71.99
40.5

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897