About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16922992_16923296_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16922992 - 16923296
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTAC
5'SS Class:
major
3'SS Sequence:
TTCTTCTTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CGTTGCTGAAGC
Flanking Amino Acid:
KLVEEAQTSKAPIQQFADKL
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
63.3
37.9
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
83.5
0.75
0.7
80.6
24.6
Minor 5ss
35
-1.7
3.6
48.7
47.8
Minor BPS
47.1
-0.2
2.2
59.68
45.2

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897