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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16923432_16924250_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16923432 - 16924250
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATCACT
Flanking Amino Acid:
DFEIVEKYFMGYNKSISAAE
Intron Amino Acid Position:
973

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73
0.52
0.9
67.3
39.1
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
57.8
0.33
2
81.79
39.5

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897