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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16925175_16925843_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16925175 - 16925843
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTATCTATATGA
Flanking Amino Acid:
PALIIDADLPTTVTSQKYSV
Intron Amino Acid Position:
1170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
73.9
32.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
84.3
0.77
0.8
81.6
30.5
Minor 5ss
44.9
-0.5
2.8
55.6
43.2
Minor BPS
47.4
-0.2
2.1
64.86
41.6

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897