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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16927581_16928114_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16927581 - 16928114
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTGCTCTAAACT
Flanking Amino Acid:
YNLIGVPIAAGVFLPIGLVL
Intron Amino Acid Position:
1374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72
32.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
38.2
-1.3
3.1
45.3
45.2
Minor BPS
57.6
0.32
1.7
72.43
44.7

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897