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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16928218_16929039_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16928218 - 16929039
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAG
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
SVVLSSLLLKMYQKPSSEKL
Intron Amino Acid Position:
1408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
60.9
0.27
1.7
71.4
45.1
Major PPT
74
0.54
0.7
68.9
24.9
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
ATP7A
Ensembl Gene ID:
ENSAPLG00000007317
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007640
16900420 - 16929316
28897