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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16940097_16941179_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16940097 - 16941179
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTAGCT
Flanking Amino Acid:
MKDHKITNNQRIKAAVPTIK
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.2
0.68
0.8
73.1
32
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
57.1
0.3
2.2
86.51
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008369
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018137
16937711 - 16948103
10393
ENSAPLT00000008748
16937711 - 16949696
11986